Table 2 Table depicting key statistics of the different models
From: A community-driven reconstruction of the Aspergillus niger metabolic network
| Model | iMA873 | iJB1325 | CoReCo | iHL1210 |
|---|---|---|---|---|
| Reactions | ||||
| Total | 1380 | 2320 | 4917 | 1764 |
| Transport | 189 | 447 | 0 | 285 |
| Boundary | 0 | 385 | 148 | 189 |
| Unbalanced | 40 | 68 | 148 | – |
| Annotated | 1013 | 1239 | 0 | – |
| No genes | 340 | 604 | 3049 | – |
| Evidence for presence | – | 767 | – | – |
| Known gene | – | 654 | – | – |
| Metabolites | ||||
| Total | 1084 | 1818 | 4025 | 1254 |
| Annotated | 0 | 1533 | 0 | |
| Dead-End | 270 | 295 | 1739 | |
| Genes | ||||
| Total | 871 | 1325 | 4533 | 1210 |
| Verified location | – | 296 | – | – |
| Predicted location | – | 107 | ||
| Known function | – | 707 | – | – |
| Evidences | ||||
| Total | – | 3482 | – | – |
| Gene-reaction | – | 1677 | – | – |
| Metabolite presence | – | 333 | – | – |
| Reaction presence | – | 539 | – | – |
| Gene-compartment | – | 907 | – | – |
| Test cases | ||||
| Total | – | 471 | – | 99 |
| Passing | – | 373 | – | 83 |
| Failing | – | 98 | – | 16 |
| References | ||||
| Total | 371 | 876 | – | – |